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7:5643145 T / C


Filter Status
PASS
dbSNP
rs1640233
Allele Frequency
0.2015
Filtering AF
0.2907 (African)
Allele Count
24381 / 120980
UCSC
7-5643145-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 12377 66474 1214 0.1862
East Asian 1254 8612 92 0.1456
Other 187 904 25 0.2069
African 3102 10358 497 0.2995
Latino 1657 11554 111 0.1434
South Asian 4616 16508 646 0.2796
European (Finnish) 1188 6570 103 0.1808
Total 24381 120980 2688 0.2015

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.