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7:6017340 T / C


Filter Status
VQSRTrancheSNP99.80to99.90
dbSNP
rs17420802
Allele Frequency
0.000373
Filtering AF
0.000313 (European (Non-Finnish))
Allele Count
45 / 120648
UCSC
7-6017340-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 29 66190 1 0.0004381
East Asian 3 8616 0 0.0003482
Other 0 906 0 0
African 2 10352 0 0.0001932
Latino 4 11556 0 0.0003461
South Asian 2 16454 0 0.0001216
European (Finnish) 5 6574 0 0.0007606
Total 45 120648 1 0.000373

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.