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7:87179809 C / T


Filter Status
PASS
dbSNP
rs2229109
Allele Frequency
0.02902
Filtering AF
0.04199 (European (Non-Finnish))
Allele Count
3520 / 121310
UCSC
7-87179809-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2888 66682 61 0.04331
East Asian 0 8650 0 0
Other 29 906 0 0.03201
African 64 10380 0 0.006166
Latino 177 11570 2 0.0153
South Asian 255 16508 5 0.01545
European (Finnish) 107 6614 0 0.01618
Total 3520 121310 68 0.02902

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.