Interested in working on the development of this resource? Apply here.

7:87229440 T / C


Filter Status
PASS
dbSNP
rs9282564
Allele Frequency
0.08002
Filtering AF
0.1103 (European (Non-Finnish))
Allele Count
9124 / 114028
UCSC
7-87229440-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7017 62388 428 0.1125
East Asian 3 8076 0 0.0003715
Other 70 872 5 0.08028
African 177 9934 4 0.01782
Latino 299 10940 9 0.02733
South Asian 399 15342 13 0.02601
European (Finnish) 1159 6476 99 0.179
Total 9124 114028 558 0.08002

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.