Interested in working on the development of this resource? Apply here.

9:123769200 C / T


Filter Status
PASS
dbSNP
rs17611
Allele Frequency
0.4586
Filtering AF
0.6246 (South Asian)
Allele Count
55638 / 121312
UCSC
9-123769200-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 29477 66684 6618 0.442
East Asian 4787 8642 1314 0.5539
Other 462 906 118 0.5099
African 832 10400 45 0.08
Latino 6346 11562 1740 0.5489
South Asian 10478 16508 3362 0.6347
European (Finnish) 3256 6610 799 0.4926
Total 55638 121312 13996 0.4586

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.