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9:140127856 G / A


Warning! This variant is only covered in 32005 individuals (adjusted allele number = 64010).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs121918239
Allele Frequency
0.004171
Filtering AF
0.008185 (South Asian)
Allele Count
267 / 64010
UCSC
9-140127856-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 138 34492 0 0.004001
East Asian 0 4284 0 0
Other 1 466 0 0.002146
African 4 4310 0 0.0009281
Latino 6 6120 0 0.0009804
South Asian 117 12192 1 0.009596
European (Finnish) 1 2146 0 0.000466
Total 267 64010 1 0.004171

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.