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9:4564432 G / A


Filter Status
PASS
dbSNP
rs2228622
Allele Frequency
0.3971
Filtering AF
0.4562 (South Asian)
Allele Count
45961 / 115750
UCSC
9-4564432-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 27348 64072 5745 0.4268
East Asian 2137 8246 256 0.2592
Other 366 870 76 0.4207
African 2159 9754 214 0.2213
Latino 4482 10874 870 0.4122
South Asian 7290 15672 1640 0.4652
European (Finnish) 2179 6262 365 0.348
Total 45961 115750 9166 0.3971

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.