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X:107827760 GTT / G

Note: This variant is multiallelic! The other alt alleles are:

Warning! This variant is only covered in 25760 individuals (adjusted allele number = 51521).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs104886315
Allele Frequency
0.0005241
Filtering AF
0.000499 (Latino)
Allele Count
27 / 51521
UCSC
X-107827760-GTT-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 18 27762 0 0 0.0006484
East Asian 1 3810 0 0 0.0002625
Other 0 395 0 0 0
African 1 5411 0 0 0.0001848
Latino 6 5231 0 0 0.001147
South Asian 0 6229 0 0 0
European (Finnish) 1 2683 0 0 0.0003727
Total 27 51521 0 0 0.0005241

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.