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X:12924826 A / G


Warning! This variant is only covered in 41082 individuals (adjusted allele number = 82164).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs3764880
Allele Frequency
0.3579
Filtering AF
0.7995 (East Asian)
Allele Count
29410 / 82164
UCSC
X-12924826-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 12028 46371 947 4664 0.2594
East Asian 5345 6536 1540 1585 0.8178
Other 194 580 24 72 0.3345
African 2285 8405 274 496 0.2719
Latino 5022 9184 1106 1125 0.5468
South Asian 3568 6599 458 1868 0.5407
European (Finnish) 968 4489 74 406 0.2156
Total 29410 82164 4423 10216 0.3579

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.