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X:152990979 C / T

Note: This variant is multiallelic! The other alt alleles are:

Warning! This variant is only covered in 10699 individuals (adjusted allele number = 21399).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs200660869
Allele Frequency
0.00271
Filtering AF
0.003693 (European (Non-Finnish))
Allele Count
58 / 21399
UCSC
X-152990979-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 54 11508 0 7 0.004692
East Asian 0 2144 0 0 0
Other 0 129 0 0 0
African 1 2316 0 0 0.0004318
Latino 0 2808 0 0 0
South Asian 2 1933 0 0 0.001035
European (Finnish) 1 561 0 0 0.001783
Total 58 21399 0 7 0.00271

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.