Interested in working on the development of this resource? Apply here.

X:152991417 G / T

Note: This variant is multiallelic! The other alt alleles are:

Warning! This variant is only covered in 42276 individuals (adjusted allele number = 84553).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs147595334
Allele Frequency
0.00162
Allele Count
137 / 84553
UCSC
X-152991417-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 25 45855 0 7 0.0005452
East Asian 0 6476 0 0 0
Other 0 605 0 0 0
African 105 8073 2 22 0.01301
Latino 7 9208 0 1 0.0007602
South Asian 0 9903 0 0 0
European (Finnish) 0 4433 0 0 0
Total 137 84553 2 30 0.00162

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.