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X:153005605 G / A


Warning! This variant is only covered in 43363 individuals (adjusted allele number = 86726).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs41314153
Allele Frequency
0.09916
Filtering AF
0.1537 (South Asian)
Allele Count
8600 / 86726
UCSC
X-153005605-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 5251 47650 158 2021 0.1102
East Asian 328 6625 12 94 0.04951
Other 64 625 3 28 0.1024
African 406 8491 10 83 0.04782
Latino 534 9310 16 116 0.05736
South Asian 1524 9503 54 959 0.1604
European (Finnish) 493 4522 17 236 0.109
Total 8600 86726 270 3537 0.09916

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.