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X:153006137 G / A

Note: This variant is multiallelic! The other alt alleles are:

Warning! This variant is only covered in 40863 individuals (adjusted allele number = 81726).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs76180859
Allele Frequency
0.02596
Filtering AF
0.03246 (Latino)
Allele Count
2122 / 81726
UCSC
X-153006137-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 1153 44580 0 1 0.02586
East Asian 222 6152 0 0 0.03609
Other 20 589 0 0 0.03396
African 252 8074 0 0 0.03121
Latino 310 8675 0 0 0.03573
South Asian 106 9514 0 0 0.01114
European (Finnish) 59 4142 0 0 0.01424
Total 2122 81726 0 1 0.02596

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.