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X:153008911 C / T


Warning! This variant is only covered in 28851 individuals (adjusted allele number = 57703).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs4898368
Allele Frequency
0.6504
Filtering AF
0.7664 (South Asian)
Allele Count
37531 / 57703
UCSC
X-153008911-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 20230 30934 4917 4521 0.654
East Asian 2681 4800 606 446 0.5585
Other 264 403 61 79 0.6551
African 2932 5782 621 344 0.5071
Latino 4438 6533 1285 491 0.6793
South Asian 5316 6781 1015 2696 0.784
European (Finnish) 1670 2470 404 414 0.6761
Total 37531 57703 8909 8991 0.6504

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.