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X:153008970 C / T

Note: This variant is multiallelic! The other alt alleles are:

Warning! This variant is only covered in 27128 individuals (adjusted allele number = 54257).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs76637913
Allele Frequency
0.01463
Filtering AF
0.02013 (European (Non-Finnish))
Allele Count
794 / 54257
UCSC
X-153008970-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 628 29183 5 194 0.02152
East Asian 0 4630 0 0 0
Other 8 390 0 3 0.02051
African 28 5402 0 3 0.005183
Latino 38 5952 1 3 0.006384
South Asian 65 6353 0 33 0.01023
European (Finnish) 27 2347 0 11 0.0115
Total 794 54257 6 247 0.01463

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.