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X:153009197 G / C


Warning! This variant is only covered in 7319 individuals (adjusted allele number = 14639).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs2229539
Allele Frequency
0.7197
Filtering AF
0.7853 (African)
Allele Count
10535 / 14639
UCSC
X-153009197-G-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 4906 7142 1342 671 0.6869
East Asian 589 910 146 61 0.6473
Other 90 124 24 27 0.7258
African 820 985 307 73 0.8325
Latino 800 1110 247 47 0.7207
South Asian 3220 4207 509 1870 0.7654
European (Finnish) 110 161 32 4 0.6832
Total 10535 14639 2607 2753 0.7197

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.