Interested in working on the development of this resource? Apply here.

X:153296689 G / A


Warning! This variant is only covered in 43838 individuals (adjusted allele number = 87676).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs61749714
Allele Frequency
0.0005475
Filtering AF
0.000913 (South Asian)
Allele Count
48 / 87676
UCSC
X-153296689-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 20 47928 0 7 0.0004173
East Asian 3 6638 0 1 0.0004519
Other 0 633 0 0 0
African 3 8498 0 0 0.000353
Latino 7 9324 0 2 0.0007508
South Asian 15 10125 0 10 0.001481
European (Finnish) 0 4530 0 0 0
Total 48 87676 0 20 0.0005475

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.