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X:153764217 C / T


Warning! This variant is only covered in 43326 individuals (adjusted allele number = 86653).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1050828
Allele Frequency
0.01151
Filtering AF
0.1075 (African)
Allele Count
997 / 86653
UCSC
X-153764217-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 10 47413 0 4 0.0002109
East Asian 0 6613 0 0 0
Other 1 612 0 0 0.001634
African 955 8415 44 197 0.1135
Latino 27 9269 0 6 0.002913
South Asian 4 10016 0 3 0.0003994
European (Finnish) 0 4315 0 0 0
Total 997 86653 44 210 0.01151

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.