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X:65824986 C / T


Warning! This variant is only covered in 40011 individuals (adjusted allele number = 80022).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1385699
Allele Frequency
0.7988
Filtering AF
0.9784 (East Asian)
Allele Count
63918 / 80022
UCSC
X-65824986-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Number of Hemizygotes Allele Frequency
European (Non-Finnish) 36607 43867 9478 13175 0.8345
East Asian 6366 6373 2262 1836 0.9989
Other 495 573 127 194 0.8639
African 1065 7546 71 212 0.1411
Latino 8114 8806 2897 1772 0.9214
South Asian 8165 9005 1475 4863 0.9067
European (Finnish) 3106 3852 723 1249 0.8063
Total 63918 80022 17033 23301 0.7988

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.