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Y:14958218 C / T


Warning! This variant is only covered in 6442 individuals (adjusted allele number = 12885).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs13304344
Allele Frequency
0.9733
Filtering AF
0.9452 (South Asian)
Allele Count
12541 / 12885
UCSC
Y-14958218-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Hemizygotes Allele Frequency
European (Non-Finnish) 5341 5527 5341 0.9663
East Asian 599 600 599 0.9983
Other 129 139 129 0.9281
African 846 849 846 0.9965
Latino 678 698 678 0.9713
South Asian 4032 4156 4032 0.9702
European (Finnish) 916 916 916 1
Total 12541 12885 12541 0.9733

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.