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Y:22942897 T / C

Warning! This variant is only covered in 15871 individuals (adjusted allele number = 31743).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.

Filter Status
Allele Frequency
Filtering AF
0.08933 (South Asian)
Allele Count
1412 / 31743
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.


This variant falls on 1 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Hemizygotes Allele Frequency
European (Non-Finnish) 720 17768 720 0.04052
East Asian 0 1941 0 0
Other 17 258 17 0.06589
African 13 1775 13 0.007324
Latino 98 2108 98 0.04649
South Asian 564 5883 564 0.09587
European (Finnish) 0 2010 0 0
Total 1412 31743 1412 0.04448

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.